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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015895446.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | GRAS | ||||||||
Protein Properties | Length: 502aa MW: 55267.5 Da PI: 6.9976 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 457.5 | 8.3e-140 | 134 | 493 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv++L++cA+av++++l+ a+al++++ la +++ +m+++a yf+eALa+r++r +y p ++ + ++ s+ l+ f+e++P+lkf+h XP_015895446.1 134 LVHALMACADAVQQNNLNIAEALVKQIGYLAMSQAGAMRKVAMYFAEALARRIYR----IY---PENPLD-HSFSDILQ--MHFYETCPYLKFAH 218 689****************************************************....55...333332.23444443..45************ PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++Ae+++v fe++ +va++l+dl+ XP_015895446.1 219 FTANQAILEAFQGKSRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAPDNSDHLQEVGWKLAQLAESIHVAFEYRGFVANSLADLD 313 *********************************************************************************************** PP GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++L+++p E++aVn+v++lh+ll++++++e+ vL++v++++P++v++veqea+hn++ F++rf e+l+yys+lfdsle ++ s++++ XP_015895446.1 314 ASMLELRPseVESVAVNSVFELHKLLARPGAIEK----VLSVVRQIKPEIVTMVEQEANHNGPVFMDRFNESLHYYSSLFDSLEGSV---SNQDK 401 ********88899*********************....************************************************7...999** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++++lg++i n+vaceg er+erhe+l++Wr+rl++aGF++v+l+++a+kqa++ll+ ++ +dgyrvee++g+l+l W++rpL+++SaW+ XP_015895446.1 402 VMSEVYLGKQILNIVACEGLERVERHEKLNQWRNRLGSAGFSSVSLGSNAYKQASMLLALFAsGDGYRVEENNGCLMLSWHTRPLIATSAWQ 493 *******************************************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.47 | 108 | 472 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.9E-137 | 134 | 493 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MANLRKVPGE VERDERRRQT GRENQSRSTC VFADASSSDY DLKAIPGKAI YGQKTTTATQ 60 LDSSSSSSRE TKRLKTSSGS TSSELFATTT SSSIAAPPPS LPPTYNNNST TVNGDSPSTR 120 PVVLVDSQEN GVRLVHALMA CADAVQQNNL NIAEALVKQI GYLAMSQAGA MRKVAMYFAE 180 ALARRIYRIY PENPLDHSFS DILQMHFYET CPYLKFAHFT ANQAILEAFQ GKSRVHVIDF 240 SMNQGMQWPA LMQALALRPG GPPAFRLTGI GPPAPDNSDH LQEVGWKLAQ LAESIHVAFE 300 YRGFVANSLA DLDASMLELR PSEVESVAVN SVFELHKLLA RPGAIEKVLS VVRQIKPEIV 360 TMVEQEANHN GPVFMDRFNE SLHYYSSLFD SLEGSVSNQD KVMSEVYLGK QILNIVACEG 420 LERVERHEKL NQWRNRLGSA GFSSVSLGSN AYKQASMLLA LFASGDGYRV EENNGCLMLS 480 WHTRPLIATS AWQLAAKPVT TH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-52 | 134 | 493 | 4 | 375 | GRAS family transcription factor containing p |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015895446.1 | 0.0 | PREDICTED: DELLA protein GAIP-B-like | ||||
Swissprot | Q8S4W7 | 0.0 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | A0A061EFF9 | 0.0 | A0A061EFF9_THECC; GRAS family transcription factor family protein | ||||
STRING | POPTR_0008s13090.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF803 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 0.0 | GRAS family protein |